Development and comparison of RNA-sequencing pipelines for more accurate SNP identification: practical example of functional SNP detection associated with feed efficiency in Nellore beef cattle

Development and comparison of RNA-sequencing pipelines for more accurate SNP identification: practical example of functional SNP detection associated with feed efficiency in Nellore beef cattle

Abstract Background Optimization of an RNA-Sequencing (RNA-Seq) pipeline is critical to maximize power and accuracy to identify genetic variants, including SNPs, which may serve as genetic markers to select for feed efficiency, leading to economic benefits for beef production. This study used RNA-Se...

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Bibliographic Details
Main Authors: S. Lam, J. Zeidan, F. Miglior, A. Suárez-Vega, I. Gómez-Redondo, P. A. S. Fonseca, L. L. Guan, S. Waters, A. Cánovas
Format: Article
Language:English
Published: BMC 2020-10-01
Series:BMC Genomics
Subjects:
Feed efficiency
Bovine
RNA-Seq
Single nucleotide polymorphisms (SNPs)
Transcriptomics
Online Access:http://link.springer.com/article/10.1186/s12864-020-07107-7

Internet

http://link.springer.com/article/10.1186/s12864-020-07107-7

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