Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds

Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds

Abstract Background To date, genome-scale analyses in the domestic horse have been limited by suboptimal single nucleotide polymorphism (SNP) density and uneven genomic coverage of the current SNP genotyping arrays. The recent availability of whole genome sequences has created the opportunity to dev...

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Bibliographic Details
Main Authors: Robert J. Schaefer, Mikkel Schubert, Ernest Bailey, Danika L. Bannasch, Eric Barrey, Gila Kahila Bar-Gal, Gottfried Brem, Samantha A. Brooks, Ottmar Distl, Ruedi Fries, Carrie J. Finno, Vinzenz Gerber, Bianca Haase, Vidhya Jagannathan, Ted Kalbfleisch, Tosso Leeb, Gabriella Lindgren, Maria Susana Lopes, Núria Mach, Artur da Câmara Machado, James N. MacLeod, Annette McCoy, Julia Metzger, Cecilia Penedo, Sagi Polani, Stefan Rieder, Imke Tammen, Jens Tetens, Georg Thaller, Andrea Verini-Supplizi, Claire M. Wade, Barbara Wallner, Ludovic Orlando, James R. Mickelson, Molly E. McCue
Format: Article
Language:English
Published: BMC 2017-07-01
Series:BMC Genomics
Subjects:
Equine genomics
Whole genome sequence
SNP-tagging
SNP chip
Variant recalibration
SNP discovery
Online Access:http://link.springer.com/article/10.1186/s12864-017-3943-8

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