GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data

GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data

Abstract Background Due the computational complexity of sequence alignment algorithms, various accelerated solutions have been proposed to speedup this analysis. NVBIO is the only available GPU library that accelerates sequence alignment of high-throughput NGS data, but has limited performance. In t...

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Bibliographic Details
Main Authors: Nauman Ahmed, Jonathan Lévy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars
Format: Article
Language:English
Published: BMC 2019-10-01
Series:BMC Bioinformatics
Subjects:
Genomics
Sequence alignment
NGS
GPU library
Online Access:http://link.springer.com/article/10.1186/s12859-019-3086-9

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http://link.springer.com/article/10.1186/s12859-019-3086-9

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