TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix

TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix

Abstract Background The challenges when developing a good de novo transcriptome assembler include how to deal with read errors and sequence repeats. Almost all de novo assemblers utilize a de Bruijn graph, with which complexity grows linearly with data size while suffering from errors and repeats. A...

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Bibliographic Details
Main Authors: Seokhyun Yoon, Daeseung Kim, Keunsoo Kang, Woong June Park
Format: Article
Language:English
Published: BMC 2018-09-01
Series:BMC Genomics
Subjects:
RNA-Seq
de novo transcriptome assembly
greedy approach
consensus matrix
read error correction
Online Access:http://link.springer.com/article/10.1186/s12864-018-5034-x

Internet

http://link.springer.com/article/10.1186/s12864-018-5034-x

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