Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Abstract Background Single-cell transcriptomics allows researchers to investigate complex communities of heterogeneous cells. It can be applied to stem cells and their descendants in order to chart the progression from multipotent progenitors to fully differentiated cells. While a variety of statist...

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Bibliographic Details
Main Authors: Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit
Format: Article
Language:English
Published: BMC 2018-06-01
Series:BMC Genomics
Subjects:
RNA-Seq
Single cell
Lineage inference
Pseudotime inference
Online Access:http://link.springer.com/article/10.1186/s12864-018-4772-0

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http://link.springer.com/article/10.1186/s12864-018-4772-0

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