Accuracy of whole-genome sequence imputation using hybrid peeling in large pedigreed livestock populations
Abstract Background The coupling of appropriate sequencing strategies and imputation methods is critical for assembling large whole-genome sequence datasets from livestock populations for research and breeding. In this paper, we describe and validate the coupling of a sequencing strategy with the im...
Main Authors: | Roger Ros-Freixedes, Andrew Whalen, Ching-Yi Chen, Gregor Gorjanc, William O. Herring, Alan J. Mileham, John M. Hickey |
---|---|
Format: | Article |
Language: | deu |
Published: |
BMC
2020-04-01
|
Series: | Genetics Selection Evolution |
Online Access: | http://link.springer.com/article/10.1186/s12711-020-00536-8 |
Similar Items
-
Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling
by: Roger Ros-Freixedes, et al.
Published: (2020-04-01) -
Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees
by: Andrew Whalen, et al.
Published: (2018-12-01) -
Family-specific genotype arrays increase the accuracy of pedigree-based imputation at very low marker densities
by: Andrew Whalen, et al.
Published: (2019-06-01) -
Assessment of the performance of hidden Markov models for imputation in animal breeding
by: Andrew Whalen, et al.
Published: (2018-09-01) -
A method for the allocation of sequencing resources in genotyped livestock populations
by: Serap Gonen, et al.
Published: (2017-05-01)