Fast lightweight accurate xenograft sorting

Abstract Motivation With an increasing number of patient-derived xenograft (PDX) models being created and subsequently sequenced to study tumor heterogeneity and to guide therapy decisions, there is a similarly increasing need for methods to separate reads originating from the graft (human) tumor an...

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Bibliographic Details
Main Authors: Jens Zentgraf, Sven Rahmann
Format: Article
Language:English
Published: BMC 2021-04-01
Series:Algorithms for Molecular Biology
Subjects:
Online Access:https://doi.org/10.1186/s13015-021-00181-w