Source Tracking Based on Core Genome SNV and CRISPR Typing of Salmonella enterica Serovar Heidelberg Isolates Involved in Foodborne Outbreaks in Québec, 2012

Source Tracking Based on Core Genome SNV and CRISPR Typing of Salmonella enterica Serovar Heidelberg Isolates Involved in Foodborne Outbreaks in Québec, 2012

Whole-genome sequencing (WGS) is the method of choice for bacterial subtyping and it is rapidly replacing the more traditional methods such as pulsed-field gel electrophoresis (PFGE). Here we used the high-resolution core genome single nucleotide variant (cgSNV) typing method to characterize clinica...

Full description

Bibliographic Details
Main Authors: Khadidja Yousfi, Valentine Usongo, Chrystal Berry, Rufaida H. Khan, Denise M. Tremblay, Sylvain Moineau, Michael R. Mulvey, Florence Doualla-Bell, Eric Fournier, Celine Nadon, Lawrence Goodridge, Sadjia Bekal
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-06-01
Series:Frontiers in Microbiology
Subjects:
source attribution
Salmonella enterica serovar Heidelberg
core genome SNV
CRISPR
PFGE
foodborne outbreaks
Online Access:https://www.frontiersin.org/article/10.3389/fmicb.2020.01317/full

Internet

https://www.frontiersin.org/article/10.3389/fmicb.2020.01317/full

Similar Items