Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data

Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data

Abstract Background Genomic interaction studies use next-generation sequencing (NGS) to examine the interactions between two loci on the genome, with subsequent bioinformatics analyses typically including annotation, intersection, and merging of data from multiple experiments. While many file types...

Full description

Bibliographic Details
Main Authors: William W. Greenwald, He Li, Erin N. Smith, Paola Benaglio, Naoki Nariai, Kelly A. Frazer
Format: Article
Language:English
Published: BMC 2017-04-01
Series:BMC Bioinformatics
Subjects:
Hi-CChIA-PET
Chromatin conformation capture
Peak
Paired-genomic-loci
Tool suite
Bedtools
Online Access:http://link.springer.com/article/10.1186/s12859-017-1621-0

Internet

http://link.springer.com/article/10.1186/s12859-017-1621-0

Similar Items