Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
The role of differential gene content in the evolution and function of eukaryotic genomes remains poorly explored. Here the authors assemble and annotate the Brachypodium distachyon pan-genome consisting of 54 diverse lines and reveal the differential present genes as a major driver of phenotypic va...
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Nature Publishing Group
2017-12-01
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| Series: | Nature Communications |
| Online Access: | https://doi.org/10.1038/s41467-017-02292-8 |
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doaj-2fe896100a29439d86bdde8e91d1a8f22021-05-11T07:53:10ZengNature Publishing GroupNature Communications2041-17232017-12-018111310.1038/s41467-017-02292-8Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structureSean P. Gordon0Bruno Contreras-Moreira1Daniel P. Woods2David L. Des Marais3Diane Burgess4Shengqiang Shu5Christoph Stritt6Anne C. Roulin7Wendy Schackwitz8Ludmila Tyler9Joel Martin10Anna Lipzen11Niklas Dochy12Jeremy Phillips13Kerrie Barry14Koen Geuten15Hikmet Budak16Thomas E. Juenger17Richard Amasino18Ana L. Caicedo19David Goodstein20Patrick Davidson21Luis A. J. Mur22Melania Figueroa23Michael Freeling24Pilar Catalan25John P. Vogel26DOE Joint Genome InstituteEstación Experimental de Aula Dei-CSICUniversity of WisconsinHarvard UniversityUniversity California, BerkeleyDOE Joint Genome InstituteUniversity of ZürichUniversity of ZürichDOE Joint Genome InstituteUniversity of Massachusetts Amherst, Institute for Applied Life SciencesDOE Joint Genome InstituteDOE Joint Genome InstituteUniversity of Leuven, KU LeuvenDOE Joint Genome InstituteDOE Joint Genome InstituteUniversity of Leuven, KU LeuvenMontana State UniversityUniversity of Texas AustinUniversity of WisconsinUniversity of Massachusetts Amherst, Institute for Applied Life SciencesDOE Joint Genome InstituteDOE Joint Genome InstituteAberystwyth UniversityUniversity of MinnesotaUniversity California, BerkeleyGrupo de Bioquímica, Biofísica y Biología Computacional (BIFI, UNIZAR), Unidad Asociada al CSICDOE Joint Genome InstituteThe role of differential gene content in the evolution and function of eukaryotic genomes remains poorly explored. Here the authors assemble and annotate the Brachypodium distachyon pan-genome consisting of 54 diverse lines and reveal the differential present genes as a major driver of phenotypic variation.https://doi.org/10.1038/s41467-017-02292-8 |
| collection |
DOAJ |
| language |
English |
| format |
Article |
| sources |
DOAJ |
| author |
Sean P. Gordon Bruno Contreras-Moreira Daniel P. Woods David L. Des Marais Diane Burgess Shengqiang Shu Christoph Stritt Anne C. Roulin Wendy Schackwitz Ludmila Tyler Joel Martin Anna Lipzen Niklas Dochy Jeremy Phillips Kerrie Barry Koen Geuten Hikmet Budak Thomas E. Juenger Richard Amasino Ana L. Caicedo David Goodstein Patrick Davidson Luis A. J. Mur Melania Figueroa Michael Freeling Pilar Catalan John P. Vogel |
| spellingShingle |
Sean P. Gordon Bruno Contreras-Moreira Daniel P. Woods David L. Des Marais Diane Burgess Shengqiang Shu Christoph Stritt Anne C. Roulin Wendy Schackwitz Ludmila Tyler Joel Martin Anna Lipzen Niklas Dochy Jeremy Phillips Kerrie Barry Koen Geuten Hikmet Budak Thomas E. Juenger Richard Amasino Ana L. Caicedo David Goodstein Patrick Davidson Luis A. J. Mur Melania Figueroa Michael Freeling Pilar Catalan John P. Vogel Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure Nature Communications |
| author_facet |
Sean P. Gordon Bruno Contreras-Moreira Daniel P. Woods David L. Des Marais Diane Burgess Shengqiang Shu Christoph Stritt Anne C. Roulin Wendy Schackwitz Ludmila Tyler Joel Martin Anna Lipzen Niklas Dochy Jeremy Phillips Kerrie Barry Koen Geuten Hikmet Budak Thomas E. Juenger Richard Amasino Ana L. Caicedo David Goodstein Patrick Davidson Luis A. J. Mur Melania Figueroa Michael Freeling Pilar Catalan John P. Vogel |
| author_sort |
Sean P. Gordon |
| title |
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure |
| title_short |
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure |
| title_full |
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure |
| title_fullStr |
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure |
| title_full_unstemmed |
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure |
| title_sort |
extensive gene content variation in the brachypodium distachyon pan-genome correlates with population structure |
| publisher |
Nature Publishing Group |
| series |
Nature Communications |
| issn |
2041-1723 |
| publishDate |
2017-12-01 |
| description |
The role of differential gene content in the evolution and function of eukaryotic genomes remains poorly explored. Here the authors assemble and annotate the Brachypodium distachyon pan-genome consisting of 54 diverse lines and reveal the differential present genes as a major driver of phenotypic variation. |
| url |
https://doi.org/10.1038/s41467-017-02292-8 |
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