Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

Rapid advances in single-cell assays have outpaced methods for analysis of those data types. Different single-cell assays show extensive variation in sensitivity and signal to noise levels. In particular, scATAC-seq generates extremely sparse and noisy datasets. Existing methods developed to analyze...

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Bibliographic Details
Main Authors: Camden Jansen, Ricardo N Ramirez, Nicole C El-Ali, David Gomez-Cabrero, Jesper Tegner, Matthias Merkenschlager, Ana Conesa, Ali Mortazavi
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2019-11-01
Series:PLoS Computational Biology
Online Access:https://doi.org/10.1371/journal.pcbi.1006555