ATAC2GRN: optimized ATAC-seq and DNase1-seq pipelines for rapid and accurate genome regulatory network inference

ATAC2GRN: optimized ATAC-seq and DNase1-seq pipelines for rapid and accurate genome regulatory network inference

Abstract Background Chromatin accessibility profiling assays such as ATAC-seq and DNase1-seq offer the opportunity to rapidly characterize the regulatory state of the genome at a single nucleotide resolution. Optimization of molecular protocols has enabled the molecular biologist to produce next-gen...

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Bibliographic Details
Main Authors: Thomas J. F. Pranzatelli, Drew G. Michael, John A. Chiorini
Format: Article
Language:English
Published: BMC 2018-07-01
Series:BMC Genomics
Subjects:
DNA footprinting
Pipeline
ATAC-seq
DNase1-seq
Regulation
Optimization
Online Access:http://link.springer.com/article/10.1186/s12864-018-4943-z

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http://link.springer.com/article/10.1186/s12864-018-4943-z

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