GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians

GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians

Abstract Background Processing and analyzing whole genome sequencing (WGS) is computationally intense: a single Illumina MiSeq WGS run produces ~ 1 million 250-base-pair reads for each of 24 samples. This poses significant obstacles for smaller laboratories, or laboratories not affiliated with large...

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Bibliographic Details
Main Authors: Jayanthi Gangiredla, Hugh Rand, Daniel Benisatto, Justin Payne, Charles Strittmatter, Jimmy Sanders, William J. Wolfgang, Kevin Libuit, James B. Herrick, Melanie Prarat, Magaly Toro, Thomas Farrell, Errol Strain
Format: Article
Language:English
Published: BMC 2021-02-01
Series:BMC Genomics
Subjects:
Galaxy
Biosurveillance
Whole genome sequencing
Food safety
Public health
GenomeTrakr
Online Access:https://doi.org/10.1186/s12864-021-07405-8

Internet

https://doi.org/10.1186/s12864-021-07405-8

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