GRAPES: a software for parallel searching on biological graphs targeting multi-core architectures.

Biological applications, from genomics to ecology, deal with graphs that represents the structure of interactions. Analyzing such data requires searching for subgraphs in collections of graphs. This task is computationally expensive. Even though multicore architectures, from commodity computers to m...

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Bibliographic Details
Main Authors: Rosalba Giugno, Vincenzo Bonnici, Nicola Bombieri, Alfredo Pulvirenti, Alfredo Ferro, Dennis Shasha
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2013-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC3805575?pdf=render