SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets

SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets

This paper presents SeQual, a scalable tool to efficiently perform quality control of large genomic datasets. Our tool currently supports more than 30 different operations (e.g., filtering, trimming, formatting) that can be applied to DNA/RNA reads in FASTQ/FASTA formats to improve subsequent downst...

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Bibliographic Details
Main Authors: Roberto R. Exposito, Roi Galego-Torreiro, Jorge Gonzalez-Dominguez
Format: Article
Language:English
Published: IEEE 2020-01-01
Series:IEEE Access
Subjects:
Big data
next-generation sequencing (NGS)
bioinformatics
quality control
apache spark
Online Access:https://ieeexplore.ieee.org/document/9162126/

Internet

https://ieeexplore.ieee.org/document/9162126/

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