A hybrid reference-guided de novo assembly approach for generating Cyclospora mitochondrion genomes

A hybrid reference-guided de novo assembly approach for generating Cyclospora mitochondrion genomes

Abstract Cyclospora cayetanensis is a coccidian parasite associated with large and complex foodborne outbreaks worldwide. Linking samples from cyclosporiasis patients during foodborne outbreaks with suspected contaminated food sources, using conventional epidemiological methods, has been a persisten...

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Bibliographic Details
Main Authors: G. R. Gopinath, H. N. Cinar, H. R. Murphy, M. Durigan, M. Almeria, B. D. Tall, A. J. DaSilva
Format: Article
Language:English
Published: BMC 2018-04-01
Series:Gut Pathogens
Subjects:
Genome sequencing
Mitochondrion
De novo assembly
Reference genome
Single nucleotide polymorphisms
Cyclosporiasis
Online Access:http://link.springer.com/article/10.1186/s13099-018-0242-0

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http://link.springer.com/article/10.1186/s13099-018-0242-0

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