Comparison of De Novo Transcriptome Assemblers and k-mer Strategies Using the Killifish, Fundulus heteroclitus.

BACKGROUND:De novo assembly of non-model organism's transcriptomes has recently been on the rise in concert with the number of de novo transcriptome assembly software programs. There is a knowledge gap as to what assembler software or k-mer strategy is best for construction of an optimal de nov...

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Bibliographic Details
Main Authors: Satshil B Rana, Frank J Zadlock, Ziping Zhang, Wyatt R Murphy, Carolyn S Bentivegna
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2016-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC4824410?pdf=render