STRetch: detecting and discovering pathogenic short tandem repeat expansions

Abstract Short tandem repeat (STR) expansions have been identified as the causal DNA mutation in dozens of Mendelian diseases. Most existing tools for detecting STR variation with short reads do so within the read length and so are unable to detect the majority of pathogenic expansions. Here we pres...

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Bibliographic Details
Main Authors: Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, Andrew Lonsdale, Mark Davis, Phillipa Lamont, Joshua S. Clayton, Nigel G. Laing, Daniel G. MacArthur, Alicia Oshlack
Format: Article
Language:English
Published: BMC 2018-08-01
Series:Genome Biology
Online Access:http://link.springer.com/article/10.1186/s13059-018-1505-2