Out-of-Equilibrium Collective Oscillation as Phonon Condensation in a Model Protein

We describe the activation of out-of-equilibrium collective oscillations of a macromolecule as a classical phonon condensation phenomenon. If a macromolecule is modeled as an open system—that is, it is subjected to an external energy supply and is in contact with a thermal bath to dissipate the exce...

Full description

Bibliographic Details
Main Authors: Ilaria Nardecchia, Jeremie Torres, Mathias Lechelon, Valeria Giliberti, Michele Ortolani, Philippe Nouvel, Matteo Gori, Yoann Meriguet, Irene Donato, Jordane Preto, Luca Varani, James Sturgis, Marco Pettini
Format: Article
Language:English
Published: American Physical Society 2018-09-01
Series:Physical Review X
Online Access:http://doi.org/10.1103/PhysRevX.8.031061
id doaj-4d0de9da12d04cf0a3f9e2c86490d39c
record_format Article
spelling doaj-4d0de9da12d04cf0a3f9e2c86490d39c2020-11-24T20:56:03ZengAmerican Physical SocietyPhysical Review X2160-33082018-09-018303106110.1103/PhysRevX.8.031061Out-of-Equilibrium Collective Oscillation as Phonon Condensation in a Model ProteinIlaria NardecchiaJeremie TorresMathias LechelonValeria GilibertiMichele OrtolaniPhilippe NouvelMatteo GoriYoann MeriguetIrene DonatoJordane PretoLuca VaraniJames SturgisMarco PettiniWe describe the activation of out-of-equilibrium collective oscillations of a macromolecule as a classical phonon condensation phenomenon. If a macromolecule is modeled as an open system—that is, it is subjected to an external energy supply and is in contact with a thermal bath to dissipate the excess energy—the internal nonlinear couplings among the normal modes make the system undergo a nonequilibrium phase transition when the energy input rate exceeds a threshold value. This transition takes place between a state where the energy is incoherently distributed among the normal modes and a state where the input energy is channeled into the lowest-frequency mode entailing a coherent oscillation of the entire molecule. The model put forward in the present work is derived as the classical counterpart of a quantum model proposed a long time ago by Fröhlich in an attempt to explain the huge speed of enzymatic reactions. We show that such a phenomenon is actually possible. Two different and complementary THz near-field spectroscopic techniques—a plasmonic rectenna and a microwire near-field probe—have been used in two different labs to eliminate artifacts. By considering an aqueous solution of a model protein, the bovine serum albumin, we find that this protein displays a remarkable absorption feature around 0.314 THz, when driven in a stationary out-of-thermal equilibrium state by means of optical pumping. The experimental outcomes are in very good qualitative agreement with the theory developed in the first part of the paper and in excellent quantitative agreement with the theoretical result, allowing us to identify the observed spectral feature with a collective oscillation of the entire molecule.http://doi.org/10.1103/PhysRevX.8.031061
collection DOAJ
language English
format Article
sources DOAJ
author Ilaria Nardecchia
Jeremie Torres
Mathias Lechelon
Valeria Giliberti
Michele Ortolani
Philippe Nouvel
Matteo Gori
Yoann Meriguet
Irene Donato
Jordane Preto
Luca Varani
James Sturgis
Marco Pettini
spellingShingle Ilaria Nardecchia
Jeremie Torres
Mathias Lechelon
Valeria Giliberti
Michele Ortolani
Philippe Nouvel
Matteo Gori
Yoann Meriguet
Irene Donato
Jordane Preto
Luca Varani
James Sturgis
Marco Pettini
Out-of-Equilibrium Collective Oscillation as Phonon Condensation in a Model Protein
Physical Review X
author_facet Ilaria Nardecchia
Jeremie Torres
Mathias Lechelon
Valeria Giliberti
Michele Ortolani
Philippe Nouvel
Matteo Gori
Yoann Meriguet
Irene Donato
Jordane Preto
Luca Varani
James Sturgis
Marco Pettini
author_sort Ilaria Nardecchia
title Out-of-Equilibrium Collective Oscillation as Phonon Condensation in a Model Protein
title_short Out-of-Equilibrium Collective Oscillation as Phonon Condensation in a Model Protein
title_full Out-of-Equilibrium Collective Oscillation as Phonon Condensation in a Model Protein
title_fullStr Out-of-Equilibrium Collective Oscillation as Phonon Condensation in a Model Protein
title_full_unstemmed Out-of-Equilibrium Collective Oscillation as Phonon Condensation in a Model Protein
title_sort out-of-equilibrium collective oscillation as phonon condensation in a model protein
publisher American Physical Society
series Physical Review X
issn 2160-3308
publishDate 2018-09-01
description We describe the activation of out-of-equilibrium collective oscillations of a macromolecule as a classical phonon condensation phenomenon. If a macromolecule is modeled as an open system—that is, it is subjected to an external energy supply and is in contact with a thermal bath to dissipate the excess energy—the internal nonlinear couplings among the normal modes make the system undergo a nonequilibrium phase transition when the energy input rate exceeds a threshold value. This transition takes place between a state where the energy is incoherently distributed among the normal modes and a state where the input energy is channeled into the lowest-frequency mode entailing a coherent oscillation of the entire molecule. The model put forward in the present work is derived as the classical counterpart of a quantum model proposed a long time ago by Fröhlich in an attempt to explain the huge speed of enzymatic reactions. We show that such a phenomenon is actually possible. Two different and complementary THz near-field spectroscopic techniques—a plasmonic rectenna and a microwire near-field probe—have been used in two different labs to eliminate artifacts. By considering an aqueous solution of a model protein, the bovine serum albumin, we find that this protein displays a remarkable absorption feature around 0.314 THz, when driven in a stationary out-of-thermal equilibrium state by means of optical pumping. The experimental outcomes are in very good qualitative agreement with the theory developed in the first part of the paper and in excellent quantitative agreement with the theoretical result, allowing us to identify the observed spectral feature with a collective oscillation of the entire molecule.
url http://doi.org/10.1103/PhysRevX.8.031061
work_keys_str_mv AT ilarianardecchia outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT jeremietorres outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT mathiaslechelon outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT valeriagiliberti outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT micheleortolani outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT philippenouvel outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT matteogori outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT yoannmeriguet outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT irenedonato outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT jordanepreto outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT lucavarani outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT jamessturgis outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
AT marcopettini outofequilibriumcollectiveoscillationasphononcondensationinamodelprotein
_version_ 1716790954441048064