SPAligner: alignment of long diverged molecular sequences to assembly graphs

Abstract Background Graph-based representation of genome assemblies has been recently used in different contexts — from improved reconstruction of plasmid sequences and refined analysis of metagenomic data to read error correction and reference-free haplotype reconstruction. While many of these appl...

Full description

Bibliographic Details
Main Authors: Tatiana Dvorkina, Dmitry Antipov, Anton Korobeynikov, Sergey Nurk
Format: Article
Language:English
Published: BMC 2020-07-01
Series:BMC Bioinformatics
Subjects:
Online Access:http://link.springer.com/article/10.1186/s12859-020-03590-7