netSmooth: Network-smoothing based imputation for single cell RNA-seq [version 2; referees: 2 approved]

Single cell RNA-seq (scRNA-seq) experiments suffer from a range of characteristic technical biases, such as dropouts (zero or near zero counts) and high variance. Current analysis methods rely on imputing missing values by various means of local averaging or regression, often amplifying biases inher...

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Bibliographic Details
Main Authors: Jonathan Ronen, Altuna Akalin
Format: Article
Language:English
Published: F1000 Research Ltd 2018-01-01
Series:F1000Research
Online Access:https://f1000research.com/articles/7-8/v2