Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Abstract Background Sequencing of marker genes amplified from environmental samples, known as amplicon sequencing, allows us to resolve some of the hidden diversity and elucidate evolutionary relationships and ecological processes among complex microbial communities. The analysis of large numbers of...

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Bibliographic Details
Main Authors: Marius Welzel, Anja Lange, Dominik Heider, Michael Schwarz, Bernd Freisleben, Manfred Jensen, Jens Boenigk, Daniela Beisser
Format: Article
Language:English
Published: BMC 2020-11-01
Series:BMC Bioinformatics
Subjects:
Amplicon sequencing
Operational Taxonomic Units
Amplicon Sequence Variants
Snakemake
Pipline
Illumina
Online Access:http://link.springer.com/article/10.1186/s12859-020-03852-4

Internet

http://link.springer.com/article/10.1186/s12859-020-03852-4

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