Scaling bioinformatics applications on HPC

Scaling bioinformatics applications on HPC

Abstract Background Recent breakthroughs in molecular biology and next generation sequencing technologies have led to the expenential growh of the sequence databases. Researchrs use BLAST for processing these sequences. However traditional software parallelization techniques (threads, message passin...

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Bibliographic Details
Main Authors: Mike Mikailov, Fu-Jyh Luo, Stuart Barkley, Lohit Valleru, Stephen Whitney, Zhichao Liu, Shraddha Thakkar, Weida Tong, Nicholas Petrick
Format: Article
Language:English
Published: BMC 2017-12-01
Series:BMC Bioinformatics
Subjects:
HPC
Blast
Parallelization
MPI
Multi-threading
Bioinformatics
Online Access:http://link.springer.com/article/10.1186/s12859-017-1902-7

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http://link.springer.com/article/10.1186/s12859-017-1902-7

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