CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

Abstract There is an increasing demand for accurate and fast metagenome classifiers that can not only identify bacteria, but all members of a microbial community. We used a recently developed concept in read mapping to develop a highly accurate metagenomic classification pipeline named CCMetagen. Th...

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Bibliographic Details
Main Authors: Vanessa R. Marcelino, Philip T. L. C. Clausen, Jan P. Buchmann, Michelle Wille, Jonathan R. Iredell, Wieland Meyer, Ole Lund, Tania C. Sorrell, Edward C. Holmes
Format: Article
Language:English
Published: BMC 2020-04-01
Series:Genome Biology
Subjects:
Microbiome
Metagenomic classifier
ConClave sorting
Fungi
Online Access:http://link.springer.com/article/10.1186/s13059-020-02014-2

Internet

http://link.springer.com/article/10.1186/s13059-020-02014-2

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