Inferring Pareto-optimal reconciliations across multiple event costs under the duplication-loss-coalescence model

Abstract Background Reconciliation methods are widely used to explain incongruence between a gene tree and species tree. However, the common approach of inferring maximum parsimony reconciliations (MPRs) relies on user-defined costs for each type of event, which can be difficult to estimate. Prior w...

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Bibliographic Details
Main Authors: Ross Mawhorter, Nuo Liu, Ran Libeskind-Hadas, Yi-Chieh Wu
Format: Article
Language:English
Published: BMC 2019-12-01
Series:BMC Bioinformatics
Subjects:
Online Access:https://doi.org/10.1186/s12859-019-3206-6