Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects.
The major histocompatibility complex (MHC) region is strongly associated with multiple sclerosis (MS) susceptibility. HLA-DRB1*15:01 has the strongest effect, and several other alleles have been reported at different levels of validation. Using SNP data from genome-wide studies, we imputed and teste...
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2013-11-01
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doaj-6e4e6d6e785f43918ef55c820b6ebf1f2020-11-25T02:36:32ZengPublic Library of Science (PLoS)PLoS Genetics1553-73901553-74042013-11-01911e100392610.1371/journal.pgen.1003926Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects.Nikolaos A PatsopoulosLisa F BarcellosRogier Q HintzenCatherine SchaeferCornelia M van DuijnJanelle A NobleTowfique RajIMSGCANZgenePierre-Antoine GourraudBarbara E StrangerJorge OksenbergTomas OlssonBruce V TaylorStephen SawcerDavid A HaflerMary CarringtonPhilip L De JagerPaul I W de BakkerThe major histocompatibility complex (MHC) region is strongly associated with multiple sclerosis (MS) susceptibility. HLA-DRB1*15:01 has the strongest effect, and several other alleles have been reported at different levels of validation. Using SNP data from genome-wide studies, we imputed and tested classical alleles and amino acid polymorphisms in 8 classical human leukocyte antigen (HLA) genes in 5,091 cases and 9,595 controls. We identified 11 statistically independent effects overall: 6 HLA-DRB1 and one DPB1 alleles in class II, one HLA-A and two B alleles in class I, and one signal in a region spanning from MICB to LST1. This genomic segment does not contain any HLA class I or II genes and provides robust evidence for the involvement of a non-HLA risk allele within the MHC. Interestingly, this region contains the TNF gene, the cognate ligand of the well-validated TNFRSF1A MS susceptibility gene. The classical HLA effects can be explained to some extent by polymorphic amino acid positions in the peptide-binding grooves. This study dissects the independent effects in the MHC, a critical region for MS susceptibility that harbors multiple risk alleles.http://europepmc.org/articles/PMC3836799?pdf=render |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Nikolaos A Patsopoulos Lisa F Barcellos Rogier Q Hintzen Catherine Schaefer Cornelia M van Duijn Janelle A Noble Towfique Raj IMSGC ANZgene Pierre-Antoine Gourraud Barbara E Stranger Jorge Oksenberg Tomas Olsson Bruce V Taylor Stephen Sawcer David A Hafler Mary Carrington Philip L De Jager Paul I W de Bakker |
spellingShingle |
Nikolaos A Patsopoulos Lisa F Barcellos Rogier Q Hintzen Catherine Schaefer Cornelia M van Duijn Janelle A Noble Towfique Raj IMSGC ANZgene Pierre-Antoine Gourraud Barbara E Stranger Jorge Oksenberg Tomas Olsson Bruce V Taylor Stephen Sawcer David A Hafler Mary Carrington Philip L De Jager Paul I W de Bakker Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects. PLoS Genetics |
author_facet |
Nikolaos A Patsopoulos Lisa F Barcellos Rogier Q Hintzen Catherine Schaefer Cornelia M van Duijn Janelle A Noble Towfique Raj IMSGC ANZgene Pierre-Antoine Gourraud Barbara E Stranger Jorge Oksenberg Tomas Olsson Bruce V Taylor Stephen Sawcer David A Hafler Mary Carrington Philip L De Jager Paul I W de Bakker |
author_sort |
Nikolaos A Patsopoulos |
title |
Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects. |
title_short |
Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects. |
title_full |
Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects. |
title_fullStr |
Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects. |
title_full_unstemmed |
Fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: HLA and non-HLA effects. |
title_sort |
fine-mapping the genetic association of the major histocompatibility complex in multiple sclerosis: hla and non-hla effects. |
publisher |
Public Library of Science (PLoS) |
series |
PLoS Genetics |
issn |
1553-7390 1553-7404 |
publishDate |
2013-11-01 |
description |
The major histocompatibility complex (MHC) region is strongly associated with multiple sclerosis (MS) susceptibility. HLA-DRB1*15:01 has the strongest effect, and several other alleles have been reported at different levels of validation. Using SNP data from genome-wide studies, we imputed and tested classical alleles and amino acid polymorphisms in 8 classical human leukocyte antigen (HLA) genes in 5,091 cases and 9,595 controls. We identified 11 statistically independent effects overall: 6 HLA-DRB1 and one DPB1 alleles in class II, one HLA-A and two B alleles in class I, and one signal in a region spanning from MICB to LST1. This genomic segment does not contain any HLA class I or II genes and provides robust evidence for the involvement of a non-HLA risk allele within the MHC. Interestingly, this region contains the TNF gene, the cognate ligand of the well-validated TNFRSF1A MS susceptibility gene. The classical HLA effects can be explained to some extent by polymorphic amino acid positions in the peptide-binding grooves. This study dissects the independent effects in the MHC, a critical region for MS susceptibility that harbors multiple risk alleles. |
url |
http://europepmc.org/articles/PMC3836799?pdf=render |
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