Protocol for executing and benchmarking eight computational doublet-detection methods in single-cell RNA sequencing data analysis

Protocol for executing and benchmarking eight computational doublet-detection methods in single-cell RNA sequencing data analysis

Summary: The existence of doublets is a key confounder in single-cell RNA sequencing (scRNA-seq) data analysis. Computational techniques have been developed for detecting doublets from scRNA-seq data. We developed an R package DoubletCollection to integrate the installation and execution of eight do...

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Bibliographic Details
Main Authors: Nan Miles Xi, Jingyi Jessica Li
Format: Article
Language:English
Published: Elsevier 2021-09-01
Series:STAR Protocols
Subjects:
Bioinformatics
Sequencing
RNAseq
Molecular Biology
Online Access:http://www.sciencedirect.com/science/article/pii/S2666166721004068

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http://www.sciencedirect.com/science/article/pii/S2666166721004068

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