outbreaker2: a modular platform for outbreak reconstruction

Abstract Background Reconstructing individual transmission events in an infectious disease outbreak can provide valuable information and help inform infection control policy. Recent years have seen considerable progress in the development of methodologies for reconstructing transmission chains using...

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Bibliographic Details
Main Authors: Finlay Campbell, Xavier Didelot, Rich Fitzjohn, Neil Ferguson, Anne Cori, Thibaut Jombart
Format: Article
Language:English
Published: BMC 2018-10-01
Series:BMC Bioinformatics
Subjects:
Online Access:http://link.springer.com/article/10.1186/s12859-018-2330-z