Mining Discriminative K-Mers in DNA Sequences Using Sketches and Hardware Acceleration

Mining Discriminative K-Mers in DNA Sequences Using Sketches and Hardware Acceleration

Extracting discriminative k-mers is an important and challenging problem in DNA sequence analysis with applications in metagenomics and motif discovery. Despite the availability of multiple computational tools designed for this purpose, most discriminative k-mer discovery methods suffer from long ex...

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Bibliographic Details
Main Authors: Antonio Saavedra, Hans Lehnert, Cecilia Hernandez, Gonzalo Carvajal, Miguel Figueroa
Format: Article
Language:English
Published: IEEE 2020-01-01
Series:IEEE Access
Subjects:
Discriminative k-mers
heavy hitters
counting sketches
parallel processing
hardware acceleration
field-programmable gate arrays
Online Access:https://ieeexplore.ieee.org/document/9122013/

Internet

https://ieeexplore.ieee.org/document/9122013/

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