OTG-snpcaller: an optimized pipeline based on TMAP and GATK for SNP calling from ion torrent data.

OTG-snpcaller: an optimized pipeline based on TMAP and GATK for SNP calling from ion torrent data.

Because the new Proton platform from Life Technologies produced markedly different data from those of the Illumina platform, the conventional Illumina data analysis pipeline could not be used directly. We developed an optimized SNP calling method using TMAP and GATK (OTG-snpcaller). This method comb...

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Bibliographic Details
Main Authors: Pengyuan Zhu, Lingyu He, Yaqiao Li, Wenpan Huang, Feng Xi, Lin Lin, Qihuan Zhi, Wenwei Zhang, Y Tom Tang, Chunyu Geng, Zhiyuan Lu, Xun Xu
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2014-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC4019570?pdf=render

Internet

http://europepmc.org/articles/PMC4019570?pdf=render

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