Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data

Computational single-cell RNA-seq analyses often face challenges in scalability, model interpretability, and confounders. Here, we show a new model to address these challenges by learning meaningful embeddings from the data that simultaneously refine gene signatures and cell functions in diverse con...

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Bibliographic Details
Main Authors: Yifan Zhao, Huiyu Cai, Zuobai Zhang, Jian Tang, Yue Li
Format: Article
Language:English
Published: Nature Publishing Group 2021-09-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-021-25534-2