Phenylboronic Acids Probing Molecular Recognition against Class A and Class C β-lactamases

Worldwide dissemination of pathogens resistant to almost all available antibiotics represent a real problem preventing efficient treatment of infectious diseases. Among antimicrobial used in therapy, β-lactam antibiotics represent 40% thus playing a crucial role in the management of infecti...

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Main Authors: Pasquale Linciano, Mattia Vicario, Ivana Kekez, Pierangelo Bellio, Giuseppe Celenza, Isabel Martín-Blecua, Jesús Blázquez, Laura Cendron, Donatella Tondi
Format: Article
Language:English
Published: MDPI AG 2019-09-01
Series:Antibiotics
Subjects:
Online Access:https://www.mdpi.com/2079-6382/8/4/171
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spelling doaj-79bf29fd59374222af5f9589247d39092020-11-25T01:41:44ZengMDPI AGAntibiotics2079-63822019-09-018417110.3390/antibiotics8040171antibiotics8040171Phenylboronic Acids Probing Molecular Recognition against Class A and Class C β-lactamasesPasquale Linciano0Mattia Vicario1Ivana Kekez2Pierangelo Bellio3Giuseppe Celenza4Isabel Martín-Blecua5Jesús Blázquez6Laura Cendron7Donatella Tondi8Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125 Modena, ItalyDepartment of Biology, University of Padova, Viale G. Colombo 3, 35121 Padova, ItalyDepartment of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, CroatiaDepartment of Biotechnological and Applied Clinical Sciences, University of L’Aquila, via Vetoio 1, 67100 L’Aquila, ItalyDepartment of Biotechnological and Applied Clinical Sciences, University of L’Aquila, via Vetoio 1, 67100 L’Aquila, ItalyNational Center of Biotechnology-CSIC, Calle Darwin 3, 28049 Madrid, SpainNational Center of Biotechnology-CSIC, Calle Darwin 3, 28049 Madrid, SpainDepartment of Biology, University of Padova, Viale G. Colombo 3, 35121 Padova, ItalyDepartment of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125 Modena, ItalyWorldwide dissemination of pathogens resistant to almost all available antibiotics represent a real problem preventing efficient treatment of infectious diseases. Among antimicrobial used in therapy, &#946;-lactam antibiotics represent 40% thus playing a crucial role in the management of infections treatment. We report a small series of phenylboronic acids derivatives (BAs) active against class A carbapenemases KPC-2 and GES-5, and class C cephalosporinases AmpC. The inhibitory profile of our BAs against class A and C was investigated by means of molecular docking, enzyme kinetics and X-ray crystallography. We were interested in the mechanism of recognition among class A and class C to direct the design of broad serine &#946;-Lactamases (SBLs) inhibitors. Molecular modeling calculations vs GES-5 and crystallographic studies vs AmpC reasoned, respectively, the ortho derivative <b>2</b> and the meta derivative <b>3</b> binding affinity. The ability of our BAs to protect &#946;-lactams from BLs hydrolysis was determined in biological assays conducted against clinical strains: Fractional inhibitory concentration index (FICI) tests confirmed their ability to be synergic with &#946;-lactams thus restoring susceptibility to meropenem. Considering the obtained results and the lack of cytotoxicity, our derivatives represent validated probe for the design of SBLs inhibitors.https://www.mdpi.com/2079-6382/8/4/171serine β-lactamasescarbapenemaseskpc-2 klebsiella pneumoniaeges-5 guyana extended-spectrum-lactamaseboronic acidenzyme inhibitorsx-ray crystallographysynergism
collection DOAJ
language English
format Article
sources DOAJ
author Pasquale Linciano
Mattia Vicario
Ivana Kekez
Pierangelo Bellio
Giuseppe Celenza
Isabel Martín-Blecua
Jesús Blázquez
Laura Cendron
Donatella Tondi
spellingShingle Pasquale Linciano
Mattia Vicario
Ivana Kekez
Pierangelo Bellio
Giuseppe Celenza
Isabel Martín-Blecua
Jesús Blázquez
Laura Cendron
Donatella Tondi
Phenylboronic Acids Probing Molecular Recognition against Class A and Class C β-lactamases
Antibiotics
serine β-lactamases
carbapenemases
kpc-2 klebsiella pneumoniae
ges-5 guyana extended-spectrum-lactamase
boronic acid
enzyme inhibitors
x-ray crystallography
synergism
author_facet Pasquale Linciano
Mattia Vicario
Ivana Kekez
Pierangelo Bellio
Giuseppe Celenza
Isabel Martín-Blecua
Jesús Blázquez
Laura Cendron
Donatella Tondi
author_sort Pasquale Linciano
title Phenylboronic Acids Probing Molecular Recognition against Class A and Class C β-lactamases
title_short Phenylboronic Acids Probing Molecular Recognition against Class A and Class C β-lactamases
title_full Phenylboronic Acids Probing Molecular Recognition against Class A and Class C β-lactamases
title_fullStr Phenylboronic Acids Probing Molecular Recognition against Class A and Class C β-lactamases
title_full_unstemmed Phenylboronic Acids Probing Molecular Recognition against Class A and Class C β-lactamases
title_sort phenylboronic acids probing molecular recognition against class a and class c β-lactamases
publisher MDPI AG
series Antibiotics
issn 2079-6382
publishDate 2019-09-01
description Worldwide dissemination of pathogens resistant to almost all available antibiotics represent a real problem preventing efficient treatment of infectious diseases. Among antimicrobial used in therapy, &#946;-lactam antibiotics represent 40% thus playing a crucial role in the management of infections treatment. We report a small series of phenylboronic acids derivatives (BAs) active against class A carbapenemases KPC-2 and GES-5, and class C cephalosporinases AmpC. The inhibitory profile of our BAs against class A and C was investigated by means of molecular docking, enzyme kinetics and X-ray crystallography. We were interested in the mechanism of recognition among class A and class C to direct the design of broad serine &#946;-Lactamases (SBLs) inhibitors. Molecular modeling calculations vs GES-5 and crystallographic studies vs AmpC reasoned, respectively, the ortho derivative <b>2</b> and the meta derivative <b>3</b> binding affinity. The ability of our BAs to protect &#946;-lactams from BLs hydrolysis was determined in biological assays conducted against clinical strains: Fractional inhibitory concentration index (FICI) tests confirmed their ability to be synergic with &#946;-lactams thus restoring susceptibility to meropenem. Considering the obtained results and the lack of cytotoxicity, our derivatives represent validated probe for the design of SBLs inhibitors.
topic serine β-lactamases
carbapenemases
kpc-2 klebsiella pneumoniae
ges-5 guyana extended-spectrum-lactamase
boronic acid
enzyme inhibitors
x-ray crystallography
synergism
url https://www.mdpi.com/2079-6382/8/4/171
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