Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants

Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants

Abstract Background Many biological analysis tasks require extraction of families of genetically similar sequences from large datasets produced by Next-generation Sequencing (NGS). Such tasks include detection of viral transmissions by analysis of all genetically close pairs of sequences from viral...

Full description

Bibliographic Details
Main Authors: Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
Format: Article
Language:English
Published: BMC 2018-10-01
Series:BMC Bioinformatics
Subjects:
Similarity search
Similarity join
K-mer
Filtering
Edit distance
Hamming distance
Online Access:http://link.springer.com/article/10.1186/s12859-018-2333-9

Internet

http://link.springer.com/article/10.1186/s12859-018-2333-9

Similar Items