MetaCarvel: linking assembly graph motifs to biological variants

Abstract Reconstructing genomic segments from metagenomics data is a highly complex task. In addition to general challenges, such as repeats and sequencing errors, metagenomic assembly needs to tolerate the uneven depth of coverage among organisms in a community and differences between nearly identi...

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Bibliographic Details
Main Authors: Jay Ghurye, Todd Treangen, Marcus Fedarko, W. Judson Hervey, Mihai Pop
Format: Article
Language:English
Published: BMC 2019-08-01
Series:Genome Biology
Subjects:
Online Access:http://link.springer.com/article/10.1186/s13059-019-1791-3