Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence

Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence

Abstract Objective The Arabidopsis thaliana Niederzenz-1 genome sequence was recently published with an ab initio gene prediction. In depth analysis of the predicted gene set revealed some errors involving genes with non-canonical splice sites in their introns. Since non-canonical splice sites are d...

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Bibliographic Details
Main Authors: Boas Pucker, Daniela Holtgräwe, Bernd Weisshaar
Format: Article
Language:English
Published: BMC 2017-12-01
Series:BMC Research Notes
Subjects:
Genome annotation
Splicing
Araport11
Gene prediction hints
Reciprocal best hit
Online Access:http://link.springer.com/article/10.1186/s13104-017-2985-y

Internet

http://link.springer.com/article/10.1186/s13104-017-2985-y

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