Integrated protocol for exitron and exitron-derived neoantigen identification using human RNA-seq data with ScanExitron and ScanNeo

Integrated protocol for exitron and exitron-derived neoantigen identification using human RNA-seq data with ScanExitron and ScanNeo

Summary: Exitron splicing (EIS) events in cancers can disrupt functional protein domains to cause cancer driver effects. EIS has been recognized as a new source of tumor neoantigens. Here, we describe an integrated protocol for EIS and EIS-derived neoantigen identification using RNA-seq data. The pr...

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Bibliographic Details
Main Authors: Ting-You Wang, Rendong Yang
Format: Article
Language:English
Published: Elsevier 2021-09-01
Series:STAR Protocols
Subjects:
Bioinformatics
Cancer
Genetics
Genomics
RNAseq
Immunology
Online Access:http://www.sciencedirect.com/science/article/pii/S2666166721004949

Internet

http://www.sciencedirect.com/science/article/pii/S2666166721004949

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