Theoretical characterisation of strand cross-correlation in ChIP-seq

Theoretical characterisation of strand cross-correlation in ChIP-seq

Abstract Background Strand cross-correlation profiles are used for both peak calling pre-analysis and quality control (QC) in chromatin immunoprecipitation followed by sequencing (ChIP-seq) analysis. Despite its potential for robust and accurate assessments of signal-to-noise ratio (S/N) because of...

Full description

Bibliographic Details
Main Authors: Hayato Anzawa, Hitoshi Yamagata, Kengo Kinoshita
Format: Article
Language:English
Published: BMC 2020-09-01
Series:BMC Bioinformatics
Subjects:
ChIP-seq
Quality control
Strand cross-correlation
Mappability
Online Access:http://link.springer.com/article/10.1186/s12859-020-03729-6

Internet

http://link.springer.com/article/10.1186/s12859-020-03729-6

Similar Items