Microbiome Preprocessing Machine Learning Pipeline

Background16S sequencing results are often used for Machine Learning (ML) tasks. 16S gene sequences are represented as feature counts, which are associated with taxonomic representation. Raw feature counts may not be the optimal representation for ML.MethodsWe checked multiple preprocessing steps an...

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Bibliographic Details
Main Authors: Yoel Jasner, Anna Belogolovski, Meirav Ben-Itzhak, Omry Koren, Yoram Louzoun
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-06-01
Series:Frontiers in Immunology
Subjects:
16S
OTU
ASV
Online Access:https://www.frontiersin.org/articles/10.3389/fimmu.2021.677870/full