HCK and ABAA: A Newly Designed Pipeline to Improve Fungi Metabarcoding Analysis

HCK and ABAA: A Newly Designed Pipeline to Improve Fungi Metabarcoding Analysis

IntroductionThe fungi ITS sequence length dissimilarity, non-specific amplicons, including chimaera formed during Polymerase Chain Reaction (PCR), added to sequencing errors, create bias during similarity clustering and abundance estimation in the downstream analysis. To overcome these challenges, w...

Full description

Bibliographic Details
Main Authors: Kodjovi D. Mlaga, Alban Mathieu, Charles Joly Beauparlant, Alban Ott, Ahmad Khodr, Olivier Perin, Arnaud Droit
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-05-01
Series:Frontiers in Microbiology
Subjects:
ABAA
benchmarking
F-score
fungi
HCK
hierarchical clustering
Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2021.640693/full

Internet

https://www.frontiersin.org/articles/10.3389/fmicb.2021.640693/full

Similar Items