Automatic Classification of Protein Structure Using the Maximum Contact Map Overlap Metric

Automatic Classification of Protein Structure Using the Maximum Contact Map Overlap Metric

In this work, we propose a new distance measure for comparing two protein structures based on their contact map representations. We show that our novel measure, which we refer to as the maximum contact map overlap (max-CMO) metric, satisfies all properties of a metric on the space of protein represe...

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Bibliographic Details
Main Authors: Rumen Andonov, Hristo Djidjev, Gunnar W. Klau, Mathilde Le Boudic-Jamin, Inken Wohlers
Format: Article
Language:English
Published: MDPI AG 2015-10-01
Series:Algorithms
Subjects:
maximum contact map overlap
protein space metric
k-nearest neighbor classification
superfamily classification
SCOP
Online Access:http://www.mdpi.com/1999-4893/8/4/850

Internet

http://www.mdpi.com/1999-4893/8/4/850

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