Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli

While specific mutations allow organisms to adapt to stressful environments, most changes in an organism's DNA negatively impact fitness. The mutation rate is therefore strictly regulated and often considered a slowly-evolving parameter. In contrast, we demonstrate an unexpected flexibility in...

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Main Authors: Toon Swings, Bram Van den Bergh, Sander Wuyts, Eline Oeyen, Karin Voordeckers, Kevin J Verstrepen, Maarten Fauvart, Natalie Verstraeten, Jan Michiels
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2017-05-01
Series:eLife
Subjects:
Online Access:https://elifesciences.org/articles/22939
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spelling doaj-8b0efc6a3e3e4a558d83494ef86cfe372021-05-05T13:26:41ZengeLife Sciences Publications LtdeLife2050-084X2017-05-01610.7554/eLife.22939Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coliToon Swings0https://orcid.org/0000-0002-1225-3377Bram Van den Bergh1Sander Wuyts2Eline Oeyen3Karin Voordeckers4Kevin J Verstrepen5Maarten Fauvart6Natalie Verstraeten7https://orcid.org/0000-0002-9548-4647Jan Michiels8https://orcid.org/0000-0001-5829-0897Centre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, BelgiumCentre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, BelgiumCentre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, BelgiumCentre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, BelgiumCentre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, Belgium; VIB Laboratory for Genetics and Genomics, Vlaams Instituut voor Biotechnologie, Leuven, BelgiumCentre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, Belgium; VIB Laboratory for Genetics and Genomics, Vlaams Instituut voor Biotechnologie, Leuven, BelgiumCentre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, Belgium; Smart Systems and Emerging Technologies Unit, Imec (Interuniversity Micro-Electronics Centre), Leuven, BelgiumCentre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, BelgiumCentre of Microbial and Plant Genetics, KU Leuven - University of Leuven, Leuven, BelgiumWhile specific mutations allow organisms to adapt to stressful environments, most changes in an organism's DNA negatively impact fitness. The mutation rate is therefore strictly regulated and often considered a slowly-evolving parameter. In contrast, we demonstrate an unexpected flexibility in cellular mutation rates as a response to changes in selective pressure. We show that hypermutation independently evolves when different Escherichia coli cultures adapt to high ethanol stress. Furthermore, hypermutator states are transitory and repeatedly alternate with decreases in mutation rate. Specifically, population mutation rates rise when cells experience higher stress and decline again once cells are adapted. Interestingly, we identified cellular mortality as the major force driving the quick evolution of mutation rates. Together, these findings show how organisms balance robustness and evolvability and help explain the prevalence of hypermutation in various settings, ranging from emergence of antibiotic resistance in microbes to cancer relapses upon chemotherapy.https://elifesciences.org/articles/22939mutagenesisevolvabilityhypermutationexperimental evolutionethanolmortality
collection DOAJ
language English
format Article
sources DOAJ
author Toon Swings
Bram Van den Bergh
Sander Wuyts
Eline Oeyen
Karin Voordeckers
Kevin J Verstrepen
Maarten Fauvart
Natalie Verstraeten
Jan Michiels
spellingShingle Toon Swings
Bram Van den Bergh
Sander Wuyts
Eline Oeyen
Karin Voordeckers
Kevin J Verstrepen
Maarten Fauvart
Natalie Verstraeten
Jan Michiels
Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli
eLife
mutagenesis
evolvability
hypermutation
experimental evolution
ethanol
mortality
author_facet Toon Swings
Bram Van den Bergh
Sander Wuyts
Eline Oeyen
Karin Voordeckers
Kevin J Verstrepen
Maarten Fauvart
Natalie Verstraeten
Jan Michiels
author_sort Toon Swings
title Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli
title_short Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli
title_full Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli
title_fullStr Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli
title_full_unstemmed Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli
title_sort adaptive tuning of mutation rates allows fast response to lethal stress in escherichia coli
publisher eLife Sciences Publications Ltd
series eLife
issn 2050-084X
publishDate 2017-05-01
description While specific mutations allow organisms to adapt to stressful environments, most changes in an organism's DNA negatively impact fitness. The mutation rate is therefore strictly regulated and often considered a slowly-evolving parameter. In contrast, we demonstrate an unexpected flexibility in cellular mutation rates as a response to changes in selective pressure. We show that hypermutation independently evolves when different Escherichia coli cultures adapt to high ethanol stress. Furthermore, hypermutator states are transitory and repeatedly alternate with decreases in mutation rate. Specifically, population mutation rates rise when cells experience higher stress and decline again once cells are adapted. Interestingly, we identified cellular mortality as the major force driving the quick evolution of mutation rates. Together, these findings show how organisms balance robustness and evolvability and help explain the prevalence of hypermutation in various settings, ranging from emergence of antibiotic resistance in microbes to cancer relapses upon chemotherapy.
topic mutagenesis
evolvability
hypermutation
experimental evolution
ethanol
mortality
url https://elifesciences.org/articles/22939
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