Prediction of RNA Pseudoknotted Secondary Structure using Stochastic Context Free Grammars (SCFG)1

Prediction of RNA Pseudoknotted Secondary Structure using Stochastic Context Free Grammars (SCFG)1

Pseudoknots are a frequent RNA structure that assumes essential roles for varied biocatalyst cell’s functions. One of the most challenging fields in bioinformatics is the prediction of this secondary structure based on the base-pair sequence that dictates it. Previously, a model adapted from...

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Bibliographic Details
Main Author: Rafael García
Format: Article
Language:English
Published: Centro Latinoamericano de Estudios en Informática 2006-12-01
Series:CLEI Electronic Journal
Subjects:
pseudoknots
Stochastic Context Free Grammars (SCFG)
secondary structure prediction
RNA
dynamic programming
Online Access:http://clei.org/cleiej-beta/index.php/cleiej/article/view/302

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http://clei.org/cleiej-beta/index.php/cleiej/article/view/302

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