Large-Scale Structural Variation Detection in Subterranean Clover Subtypes Using Optical Mapping

Large-Scale Structural Variation Detection in Subterranean Clover Subtypes Using Optical Mapping

We selected two genetically diverse subspecies of the Trifolium model species, subterranean clover cvs. Daliak and Yarloop. The structural variations (SVs) discovered by Bionano optical mapping (BOM) were validated using Illumina short reads. In the analysis, BOM identified 12 large-scale regions co...

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Bibliographic Details
Main Authors: Yuxuan Yuan, Zbyněk Milec, Philipp E. Bayer, Jan Vrána, Jaroslav Doležel, David Edwards, William Erskine, Parwinder Kaur
Format: Article
Language:English
Published: Frontiers Media S.A. 2018-07-01
Series:Frontiers in Plant Science
Subjects:
structural variation
optical mapping
Bionano
nucleotide validation
reference
Online Access:https://www.frontiersin.org/article/10.3389/fpls.2018.00971/full

Internet

https://www.frontiersin.org/article/10.3389/fpls.2018.00971/full

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