Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges

Abstract Challenges are achieving broad acceptance for addressing many biomedical questions and enabling tool assessment. But ensuring that the methods evaluated are reproducible and reusable is complicated by the diversity of software architectures, input and output file formats, and computing envi...

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Bibliographic Details
Main Authors: Kyle Ellrott, Alex Buchanan, Allison Creason, Michael Mason, Thomas Schaffter, Bruce Hoff, James Eddy, John M. Chilton, Thomas Yu, Joshua M. Stuart, Julio Saez-Rodriguez, Gustavo Stolovitzky, Paul C. Boutros, Justin Guinney
Format: Article
Language:English
Published: BMC 2019-09-01
Series:Genome Biology
Online Access:http://link.springer.com/article/10.1186/s13059-019-1794-0