Reproducibility of SNV-calling in multiple sequencing runs from single tumors

We examined 55 technical sequencing replicates of Glioblastoma multiforme (GBM) tumors from The Cancer Genome Atlas (TCGA) to ascertain the degree of repeatability in calling single-nucleotide variants (SNVs). We used the same mutation-calling pipeline on all pairs of samples, and we measured the ex...

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Bibliographic Details
Main Authors: Dakota Z. Derryberry, Matthew C. Cowperthwaite, Claus O. Wilke
Format: Article
Language:English
Published: PeerJ Inc. 2016-01-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/1508.pdf