Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Abstract Background K-mer-based methods have greatly advanced in recent years, largely driven by the realization of their biological significance and by the advent of next-generation sequencing. Their speed and their independence from the annotation process are major advantages. Their utility in the...

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Bibliographic Details
Main Authors: Ariane Bize, Cédric Midoux, Mahendra Mariadassou, Sophie Schbath, Patrick Forterre, Violette Da Cunha
Format: Article
Language:English
Published: BMC 2021-03-01
Series:BMC Genomics
Subjects:
Extrachromosomal element
Virus
Plasmid
5-mer
Codon composition
Multivariate analysis
Online Access:https://doi.org/10.1186/s12864-021-07471-y

Internet

https://doi.org/10.1186/s12864-021-07471-y

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