An Investigation of Alternatives to Transform Protein Sequence Databases to a Columnar Index Schema

An Investigation of Alternatives to Transform Protein Sequence Databases to a Columnar Index Schema

Mass spectrometers enable identifying proteins in biological samples leading to biomarkers for biological process parameters and diseases. However, bioinformatic evaluation of the mass spectrometer data needs a standardized workflow and system that stores the protein sequences. Due to its standardiz...

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Bibliographic Details
Main Authors: Roman Zoun, Kay Schallert, David Broneske, Ivayla Trifonova, Xiao Chen, Robert Heyer, Dirk Benndorf, Gunter Saake
Format: Article
Language:English
Published: MDPI AG 2021-02-01
Series:Algorithms
Subjects:
trie
radix tree
storage system
sequence data
proteomics
mass spectrometry
Online Access:https://www.mdpi.com/1999-4893/14/2/59

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https://www.mdpi.com/1999-4893/14/2/59

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