Accelerating a cross-correlation score function to search modifications using a single GPU

Accelerating a cross-correlation score function to search modifications using a single GPU

Abstract Background A cross-correlation (XCorr) score function is one of the most popular score functions utilized to search peptide identifications in databases, and many computer programs, such as SEQUEST, Comet, and Tide, currently use this score function. Recently, the HiXCorr algorithm was deve...

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Bibliographic Details
Main Authors: Hyunwoo Kim, Sunggeun Han, Jung-Ho Um, Kyongseok Park
Format: Article
Language:English
Published: BMC 2018-12-01
Series:BMC Bioinformatics
Subjects:
Peptide identification
Tide
Cross-correlation score function
High performance computing
PTM search
Online Access:http://link.springer.com/article/10.1186/s12859-018-2559-6

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http://link.springer.com/article/10.1186/s12859-018-2559-6

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