Utilization of Tissue Ploidy Level Variation in de Novo Transcriptome Assembly of Pinus sylvestris

Utilization of Tissue Ploidy Level Variation in de Novo Transcriptome Assembly of Pinus sylvestris

Compared to angiosperms, gymnosperms lag behind in the availability of assembled and annotated genomes. Most genomic analyses in gymnosperms, especially conifer tree species, rely on the use of de novo assembled transcriptomes. However, the level of allelic redundancy and transcript fragmentation in...

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Bibliographic Details
Main Authors: Dario I. Ojeda, Tiina M. Mattila, Tom Ruttink, Sonja T. Kujala, Katri Kärkkäinen, Jukka-Pekka Verta, Tanja Pyhäjärvi
Format: Article
Language:English
Published: Oxford University Press 2019-10-01
Series:G3: Genes, Genomes, Genetics
Subjects:
Haploid tissue
megagametophyte
paralogy
Pinus sylvestris
allelic redundancy
short-reads
RNA-Seq
Online Access:http://g3journal.org/lookup/doi/10.1534/g3.119.400357

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http://g3journal.org/lookup/doi/10.1534/g3.119.400357

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