A comparative study of topology-based pathway enrichment analysis methods
Abstract Background Pathway enrichment extensively used in the analysis of Omics data for gaining biological insights into the functional roles of pre-defined subsets of genes, proteins and metabolites. A large number of methods have been proposed in the literature for this task. The vast majority o...
Main Authors: | Jing Ma, Ali Shojaie, George Michailidis |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2019-11-01
|
Series: | BMC Bioinformatics |
Subjects: | |
Online Access: | http://link.springer.com/article/10.1186/s12859-019-3146-1 |
Similar Items
-
Methods and approaches in the topology-based analysis of biological pathways
by: Cristina eMitrea, et al.
Published: (2013-10-01) -
Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data
by: Giuseppe Agapito, et al.
Published: (2021-09-01) -
Shiny Application for Enrichment and Topological Pathway Analysis
by: Biesiada, Jacek
Published: (2020) -
pathfindR: An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks
by: Ege Ulgen, et al.
Published: (2019-09-01) -
Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics
by: Peter D. Karp, et al.
Published: (2021-03-01)